Chinese cut methane emissions through better rice farming

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Theres not much to smile about in the run up to Copenhagen. However, I snapped up this piece of good news in August but haven’t had the time to post it. Its well worth a read. Basically, draining the water out of rice paddies during the growing season has led to dramatic reductions in methane emissions from Chinese rice-growing sector. Studies conducted by scientists from China and the United States estimate that methane emissions from rice paddies have fallen by a staggering 70% since 1980.

Farmers normally flood rice fields throughout the growing season, meaning that methane is produced by microbes underwater as they help to decay any flooded organic matter.

By studying experimental rice plots and real farmland, Chris Butenhoff and Aslam Khalil, physicists from Portland State University in Portland, Oregon, together with Xiong Zhenqin, an ecologist at Nanjing Agricultural University in China’s Jiangsu province, and their colleagues set out to identify the different factors that affect this process.

The team found that draining paddy fields in the middle of the rice-growing season — a practice that most Chinese farmers have adopted since the 1980s because it increases rice yields and saves water — stopped most of the methane release from the field. The team presented their results on 13 August at a meeting on climate science convened at a Beijing hotel by the US Department of Energy and China’s Ministry of Science and Technology.

Earlier this year, another team of scientists reported that global methane emissions from rice paddies could be cut by 30% if fields are drained at least once during the growing season. This is a great example of changes in farming practices that not only result in substantial improvements in local and regional yields, but could also have a significant effect in reducing global greenhouse gas emissions.

What’s killing the turtles in Moreton Bay?

turtle rescue

In the canoe is Dr Scarla Weeks, a senior researcher here at the Coral Reef Ecosystems lab, escorting a pretty ill looking ‘teenage’ turtle that she stumbled across in the middle of Moreton Bay. Scarla mentioned that she found the turtle floating on the surface, and noticing that it was covered in algal slime and unable to dive to depths, (precariously) balanced the turtle on her kayak and called the veterinary team at Australia Zoo upon return to land. An isolated event? Apparently the turtle Scarla reported was the 5th to be collected from the bay that Sunday morning alone…

The cause of ‘floating’ turtle syndrome is often due to the ingestion of plastic bags and other marine waste – fishing line, balloons, bottles.  Unusual? Not really – a recent study on leatherback turtles went as far as to suggest that a third of adult turtles had remnants of plastic in their digestive tracts. Stuck at the surface and unable to feed, ‘floating’ turtles undergo a prolonged death of starvation and exposure to the sun.

turtle rescue1

In recent months , the numbers of turtles and dolphins washing up dead on the shores of Moreton Bay has come under scrutiny in the media. Last week, several adult female dugongs were found washed up along the shore lines, and at least three dolphin carcasses were found floating in the middle of the bay since August.  The Wildlife Preservation Society of Queensland reported that over 10 dead turtles were reported in the bay in the last 2 weeks, along with at least 5 sick turtles reported by Scarla above.

So what’s killing the turtles and marine life of Moreton Bay? Whilst John Thorogood, an aquatic biologist at FRC Environmental suggests that something is happening to the water quality in the Bay, renowned turtle expert and chief scientist Col Limpus suggests that the number of deaths in recent weeks isn’t unusual, and likely reflects animals in poor condition not surviving through the winter months. The jury appears hung on the exact cause, but Scarla suggests that a recent dramatic winter cooling of ocean temperatures in the Southern Great Barrier Reef and offshore of Moreton Bay of upto 2 degrees from normal conditions might be responsible for the upsurge in marine deaths, but plastic & marine debris appear to be major contributing factors.

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Humpty dumpty and the ghosts

There is a nice, new essay on the NYT.com by Olivia Judson about the complexity of ecological communities.  And about how ecologists strive to understand the impacts of loosing key species from complex ecosystems.  She also discusses the challenges of understanding or untangling how complex systems like coral reefs operate.

I couldn’t help chuckling at myself the other morning as I typed “Humpty Dumpty” into the search box of one of the big science databases. Humpty Dumpty, as anyone who remembers their nursery rhymes will recall, is an egg-shaped fellow who takes a bad fall. At which point, “All the King’s horses / and all the King’s men / Couldn’t put Humpty together again”.

But, as I discovered during my researches, Humpty Dumpty is an important personage. He has, for example, had a gene named after him. In fruit flies, mutations to the Humpty Dumpty gene produce a number of unfortunate effects, including thin egg shells. He has also lent his name to a scale that measures the severity of falls.

But neither of those is what I was looking for. I was looking for papers on the Humpty Dumpty community.

To see what this means, imagine a small pond. Let’s say that it’s home to a flourishing community of species — insects, fishes, algae, weeds, and so on. Now, suppose one of the species disappears — let’s say that humans fish out all members of one of the fish species. You want to undo this little extinction.

The obvious thing to do is to add fish of the missing species back into the pond. Which might work. But it might not. It might be that some other animal has occupied the fish’s niche, preventing the fish from moving in again.

Or it might be that the fish can only become established in the presence of, say, a certain species of insect — but that insect has long-since vanished. If this were the case, you’d have a Humpty Dumpty community: if it disintegrates, you cannot rebuild it from its parts. In other words, the ability to reconstitute the community depends on species that are no longer there.

How common is this phenomenon? It’s not clear. Humpty Dumpty effects often occur in mathematical models of ecosystems. But whether Humpty is important in nature is an open question.

Which isn’t surprising. Ecology is one of the hardest branches of biology, possibly of all science. Real ecological communities are fantastically complex — think of a rainforest, or a coral reef — and hard to dissect and understand. Experiments in the wild are difficult to control, and important variables are often hard to measure. Imagine trying to measure the impact that, say, earthworms have on oak trees: it’s damnably difficult.

Experiments in the laboratory are problematic too. Microcosm experiments — where you set up miniature worlds inhabited by just a few species of single-celled beings — quickly become massive. For instance, suppose you’re interested in the question of whether individuals of different species can live together. (This is an important question, for it bears on how ecosystems form.) To keep things simple, you decide to investigate a mere six species. You want to be thorough, so you’re going to consider all combinations, from each species living alone, to all six together.

But that’s already 63 combinations. Worse, in order to be more confident about the results, you can’t just do each one once, you need to replicate them. So you set up each combination six times. That’s 378 microcosms. Worse still, ecosystems — even small and simple ones — don’t stabilize in an afternoon. You have to wait for several months before you can be sure the system has settled into a “final” form. See what I mean? (Incidentally, I didn’t invent this experiment: it has actually been done. Those 60-plus combinations produced only eight different communities that were stable and persistent. Most of these were simple, containing only one or two species.)

Of course, Out There in Nature, there’s no such thing as a “final” form. New immigrants regularly arrive, whether we’re talking about a mangrove swamp in Florida, or the most remote islands in the Pacific. Sometimes these new arrivals fail to thrive. Sometimes they become established, perhaps driving other species extinct as they do so.

Or perhaps they have a more subtle effect: they fail to thrive and yet they drive other species extinct. Such species have been called “ghosts,”, the idea being that they have a definite, but unseen, impact on the stability of the community.

Again, ghosts have been detected in mathematical models more often than they’ve been sighted in nature. In fact, it’s not clear that they exist. The best evidence that they might be important comes from those microcosms I was mentioning. Earlier, I described only the first half of the experiment. The second half took the persistent, “final” form communities and subjected them to various invasions. In several cases, the invaders could not become established, yet the composition of the community shifted, with one of the original species going extinct.

Humpty Dumpty and the ghosts — the names are light-hearted, the theory is esoteric, but the problems they touch on are urgent. How do ecosystems form? How much impact do invaders have? What are our chances of restoring damage done by fishing or farming? We are pushing our ecosystems to the brink. If we don’t understand how they work, we can’t hope to limit the damage. And we need to try: after all, this is our home.

Link

PS-for you climate shifts junkies following the horse race, I just tied Jez in our race to 100 posts and the grand prize sponsored by OHG.

PSS-for UQ people, I am in Chapel Hill in a seminar sitting next to Ann Mooney!

The sharpnose puffer explosion of 2009

Many people have observed the striking increases in sharpnose pufferfish on Caribbean reefs this year.   You can read accounts of the explosion here and here (hint: click “next message” to scroll through them).  The sharpnose puffer is a small (3-4 cm), goofy (or cute depending on your perspective) fish that hovers around the bottom of reefs like little helicopters.  My lab surveyed 20 reefs in Belize in May and we were struck by their densities.  At several sites, they were literally the most common fish!  Their antics kept us all entertained as we performed our surveys.

Such regional population explosions are not uncommon.  I worked on a massive explosion of subtidal mussels with Jon Witman in the Gulf of Maine when I was a PhD student in the mid 1990s.  We surveyed dozens of sites off Rhode Island, New Hampshire and up into Maine, many miles offshore.  Everywhere we went, the coverage by tiny mussel recruits was near 100%.  But within months, their predators responded and sea star populations, having gone through their own explosion, gobbled them up (Witman et al 2003).

Regarding the sharpnose pufferfish phenom, our otherside video of the month prize goes to Drew Wohl who documented the plight of the sharpnose puffer in a short film that includes dire warnings and sad music to accompany the puffer-death-spiral.

[youtube=http://www.youtube.com/watch?v=MrCDe6vfsaU&w=560&h=340]

Canary in a coal mine?  Caused by coastal development? Personally, I really doubt it.   In Belize, the puffers where everywhere, including inside fully-protected reserves and on reefs tens of miles from shore and people.  In fact the highest densities (64 individuals per 100m2) were on Glovers Reef, just east of the WCS research station in a no-take reserve.


Reference

Witman, J.D., et al. (2003) Massive prey recruitment and the control of rocky subtidal communities on large spatial scales. Ecological Monographs 73, 441-462


Climate Literacy

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There is a great article on the Earth Forum about Climate Literacy.  The permanant link is here and an expanded version of the article (titled the Climate Literacy Handook) is here (in the Encyclopedia of Earth).  Ill exerpt some of the short version below.  Also check our the Coral Reefs collection at the EoE here.

This handbook presents the basic scientific concepts of climate science for non-technical audiences. It is an elaboration of Climate Literacy: The Essential Principles of Climate Sciences, a set of seven principles and their underlying fundamental concepts that developed by scientists and educators. This set of principles has been reviewed and endorsed by the  U.S. Climate Change Science Program. Commentary and online resources follow each principle, allowing further exploration of key climate literacy concepts. The handbook aims to promote greater climate science literacy by providing an educational framework around the Essential Principles of Climate Science.

A climate-literate person:

  • understands the essential principles of Earth’s climate system,
  • knows how to assess scientifically credible information about climate,
  • communicates about climate and climate change in a meaningful way, and
  • is able to make informed and responsible decisions with regard to actions that may affect climate

Why does climate science literacy Matter?

  • During the 20th century, Earth’s globally averaged surfacetemperature rose by approximately 1.08°F (0.6°C). Additional warming of more than 0.25°F (0.14°C) has been measured since 2000. Though the total increase may seem small, it likely represents an extraordinarily rapid rate of change compared to changes in the previous 10,000 years.
  • Over the 21st century, climate scientists expect Earth’s temperature to continue increasing, very likely more than it did during the 20th century. Two anticipated results are rising global sea level and increasing frequency and intensity of heat waves, droughts, and floods. These changes will affect almost every aspect of human society, including economic prosperity, human and environmental health, and national security.
  • Scientific observations and climate model results indicate that human activities are now the primary cause of most of the ongoing increase in Earth’s globally averaged surface temperature.

The Essential Principles of Climate Science Literacy

  1. Principle 1. The Sun is the primary source of energy for Earth’s climate system.
  2. Principle 2. Climate is regulated by complex interactions among components of the Earth system.
  3. Principle 3. Life on Earth depends on, is shaped by, and affects climate.
  4. Principle 4. Climate varies over space and time through both natural and man-made processes.
  5. Principle 5. Our understanding of the climate system is improved through observations, theoretical studies, and modeling
  6. Principle 6. Human activities are impacting the climate system.
  7. Principle 7. Climate change will have consequences for the Earth system and human lives

PS-sorry for the absence.  I was working on San Cristobal Island in the Galapagos-a truly stunning place.  There were already signs of the pending El Nino.  If you are interested, I blogged about the trip here.


Killer squid attacks divers

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Best headline ever: “Attack of the giant squids: Terror as hundreds of 5ft long creatures of the deep invade Californian coastline” (thanks to the Daily Mail). Turns out the backstory behind this one is even more interesting: the squid at hand (the humboldt squid) have envaded the San Diego coastline en masse due to unknown reasons (apparently global warming, shortage of food, predator avoidance and even underwater earthquakes have been cited as possible explanations). These squid are huge – up to 2m in length an weighing ~50kg, and school in numbers upto 1200.

Sounds relatively harmeless, right? Here’s how Scott Cassell, a commercial diver out of La Jolla described his experience diving with the Humboldt squid:

The monstrous squid remains motionless just ten feet away. Emotions gave way to cognitive thought and I trained my camcorder on him and begin to record. Almost on cue, he begins his approach. Then, with blinding acceleration, he lurches onto me with a powerful “thud crackle”. He slams into my chest. The impact was incredibly powerful, knocking the wind out of me. His huge arms envelope my complete upper body and camera and I can feel my chest plate move as his beak grinds against it. The crackle and scratching of thousands of chitenous ring teeth against my fiberglass/kevlar chest plate is unmistakable. (Read more)

The rest of Cassell’s article is fascinating:

The beak of a Dosidicus gigas is large and very powerful. The edges are assharp as trauma shears and are capable of gouging out an orange-sized chunk of flesh, regardless of tissue make up. I have seen a five-foot Dosidicus gigas bite through the thick bone of a tuna head, skull and all, with minimal effort removing fist-sized portions with each bite.

To hold their prey item firmly, this squid has about 2,000 suction disks; each lined with chitenous ring teeth. Chitin is a material similar to that of fingernails and that of beetle exoskeletons (A polysaccharide). These chitenous ring teeth are needle sharp and very effective. Every suction disk has up to 36 of these teeth. That means a Humboldt squid employs as many as 72,000 teeth upon its hapless victims. Prey has little chance of escaping a Humboldt squid’s deadly embrace.

Thousands of ring teeth cut into the flesh of their prey so deeply, you can hear it. When they drag their victim away with pulses from their massive jet funnel, the sounds of their hapless victim being ripped apart fills the water. It sounds a bit like heavy duty Velcro being pulled apart underwater. Then the beak can be heard, that huge knife-edged beak. The gouging of bone and tissue sound like the shredding of cabbage combined with that of hacking apart coconuts with a machete.

(Read More)

But to cut to the chase – skip to around 1.40 onwards in the video below for the footage (2.22 is also pretty freaky).
[youtube=http://www.youtube.com/watch?v=lcKQt5hHDXg&w=560&h=340]

“Problem child” El Nino has returned

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Here’s one to keep an eye on for the following season – courtesy of Science Magazine:

Batten down the hatches! The disruptive weather pattern known as El Niño has developed once again in the central Pacific Ocean, the first time since 2006, scientists announced today. Satellite instruments have recorded a band of telltale warming in surface waters of about 1°C. That could mean damaging storms this winter in California and across the southern half of the United States, as well as heavy rains in Central and South America, drought in Southeast Asia and Australia, and less productive fisheries in the eastern Pacific. On the positive side, El Niño’s return also tends to moderate the Atlantic hurricane season and bring milder winters to North America.

For more than a century, ship captains and fishers have been aware of a recurring pattern in the weather in the eastern Pacific, which tends to repeat itself every 3 to 4 years. The pattern is known as El Niño–or “The Boy Child”–because its effects seem to be felt the most around Christmastime. Scientists now understand that an El Niño period begins when a narrow but well-defined band of surface water, at least 0.5°C warmer than normal, accumulates in the eastern equatorial Pacific and spreads westward during late spring and early summer (see diagram). Satellite data have now confirmed just such a pattern, report scientists at the U.S. National Oceanic and Atmospheric Administration (NOAA).

What isn’t yet known is how strong an El Niño will eventually develop and how long it is likely to last. That’s because the data collected so far are insufficient to determine those factors. But NOAA’s Climate Prediction Center in Camp Springs, Maryland, estimates that for the next several months the overall effect across the United States should be mild. Whether El Niño will stick around for longer and bring destruction remains undetermined.

The previous El Niño, which occurred in 2006–2007, produced relatively tepid effects. But one of its recent predecessors, in 1997–1998, was considered the strongest ever recorded. It caused the average sea-surface temperature in the central Pacific to rise as much as 5°C above normal and warmed average global air temperatures temporarily by about 2.5°C –some five times higher than an El Niño normally generates. That episode also more than doubled 1997–1998 seasonal rainfall over Southern California, washing out roads and bridges and causing landslides.

Catch of the day: invasive lionfish

Pigeon Creek lionfish haul

Lionfish caught, cooked and eaten in the Bahamas. Photo Niels Lindquist

I think lionfish are at least one of the top three threats to Caribbean reefs.  And I have written several papers arguing that the threat from exotic species is often greatly exaggerated. (So I am generally skeptical about claims of pending doom from exotic invasions) In most cases, the addition of non-native species simply increases local species richness, with minimal negative affects on native communities.

There are certainly exceptions –  exotics that become very abundant and competitively exclude native species or exotic predators that exert strong top down control on native populations, e.g., the brown tree snake on Guam, the cane toad invasion in Australia and rats on oceanic islands.

Lionfish art 4_2

There is a lot of talk, particularly on the coral list about how the lionfish invasion can be halted and how they can be locally exterminated.  Experience from other vertebrate invasions strongly suggests such efforts will be futile at best.  But one glimmer of hope is that lionfish are edible, really easy to catch and they taste really good!  Like chicken!  No, seriously like grouper.  One thing people do really well is drive vertebrate predators to near extinction by over-harvesting them!   There are a variety of efforts underway to educate the public about how to safely catch, clean and cook them and to encourage the development of a commercial fishery.  Some of this information is being organized and shard by “The Lionfish Hunter” at www.lionfishhunter.com (hat tip to Steve LeGore).  The site includes recipes and a “lionfish hunter certification test“.

There is also lots of info about safely cleaning and cooking lionfish and more recipes here and here.

[youtube=http://www.youtube.com/watch?v=hR-0zXnYMuc&w=425&h=344]

[youtube=http://www.youtube.com/watch?v=z05u8uZUGQE&w=425&h=344]

Management effectiveness of the world’s marine fisheries

UPDATE: Camilo Mora, the lead author of the study, posted a comment about the test of expert opinions.   “I would like to clarify that one of the tests we did in this paper was to compare the expert’s opinions with actual empirical data collected by one of us (i.t. Tony Pitcher). We found that experts’ opinions match very well the reality of the management of each country and if anything the people inquired actually tended to be more positive about the situation (figure 1c in the paper).  The test you refer to that compared the responses of different experts was intended to assess the precision of the data while the comparison of experts’ answers with empirical data was intended to assess their accuracy. – Camilo”

I wanted his clarification to come up in the main blog post.  Ill look at this issue tonight and will comment/reply if appropriate ASAP.  – “Bruno”

journal.pbio.1000131.g004A new paper (Mora et al. 2009) published in the high profile, open access journal PLoS Biology, documents the management effectiveness of the world’s marine fisheries.  The international team based the analysis on questioners filled out by 1,188 fisheries experts.  The experts were asked to assess the current effectiveness of fisheries management around the world.  The study also calculated “probable sustainability of reported catches to determine how management affects fisheries sustainability”.

One neat aspect of the study is that it asked the experts to evaluate a variety of aspects of management effectiveness including capacity to implement regulations.  However, the weakness, in my opinion, is that the study relied on expert opinion, rather than data. The authors argued that the fact that the experts largely agreed with each other was evidence of the correctness of their opinions: “Experts were mostly fisheries managers, university professors, and governmental and nongovernmental researchers. Despite these diverse backgrounds, responses were highly consistent within each country (i.e., where multiple responses were given, 67% of experts chose the same answer to any given question and 27% chose the next closest response”.  To me, this assertion seems dubious at best.   (There are a number of beliefs held by most my coral reef colleagues that are demonstrably false or only weakly supported by empirical science.)

Our survey shows that 7% of all coastal states undergo rigorous scientific assessment for the generation of management policies, 1.4% also have a participatory and transparent processes to convert scientific recommendations into policy, and 0.95% also provide for robust mechanisms to ensure the compliance with regulations; none is also free of the effects of excess fishing capacity, subsidies, or access to foreign fishing. A comparison of fisheries management attributes with the sustainability of reported fisheries catches indicated that the conversion of scientific advice into policy, through a participatory and transparent process, is at the core of achieving fisheries sustainability, regardless of other attributes of the fisheries. Our results illustrate the great vulnerability of the world’s fisheries and the urgent need to meet well-identified guidelines for sustainable management; they also provide a baseline against which future changes can be quantified.

[youtube=http://www.youtube.com/watch?v=MwG3whtgn64&w=560&h=340]

Authors Summary: Global fisheries are in crisis: marine fisheries provide 15% of the animal protein consumed by humans, yet 80% of the world’s fish stocks are either fully exploited, overexploited or have collapsed. Several international initiatives have sought to improve the management of marine fisheries, hoping to reduce the deleterious ecological and socioeconomic consequence of the crisis. Unfortunately, the extent to which countries are improving their management and whether such intervention ensures the sustainability of the fisheries remain unknown. Here, we surveyed 1,188 fisheries experts from every coastal country in the world for information about the effectiveness with which fisheries are being managed, and related those results to an index of the probable sustainability of reported catches. We show that the management of fisheries worldwide is lagging far behind international guidelines recommended to minimize the effects of overexploitation. Only a handful of countries have a robust scientific basis for management recommendations, and transparent and participatory processes to convert those recommendations into policy while also ensuring compliance with regulations. Our study also shows that the conversion of scientific advice into policy, through a participatory and transparent process, is at the core of achieving fisheries sustainability, regardless of other attributes of the fisheries. These results illustrate the benefits of participatory, transparent, and science-based management while highlighting the great vulnerability of the world’s fisheries services.

[youtube=http://www.youtube.com/watch?v=ZaVJRMSm4-o&w=425&h=344]

From the concluding remarks:  “Current projections suggest that total demand for fisheries products is likely to increase by approximately 35 million metric tonnes by 2030… This contrasts sharply with the 20% to 50% reduction in current fishing effort suggested for achieving sustainability, and implies that regulators may face increasing pressures towards unsustainable catch quotas. Given that the demand for fish lies outside the control of conventional fisheries management, other national and international institutions will have to be involved to deal with poverty alleviation and stabilization of the world’s human population (to soften fisheries demand), if pressures on management are to be prevented and sustainability achieved.”

Citation: Mora C. et al. (2009) Management Effectiveness of the World’s Marine Fisheries. PLoS Biol 7(6): e1000131. doi:10.1371/journal.pbio.1000131

Climate change responsible for shrinking sheep

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To be honest, I struggled to believe the headline news: “Climate change is shrinking sheep” – surely April fools day was over 3 months ago? Reading on, the story becomes more intriguing… Apparently, researchers have conducted detailed measurements on the body weights of a population of Soay sheep on the island of Herta off of the Scottish coastline since 1986. Soay sheep are an intriguing bunch, first brought to the island in 1936 and remaining isolated since, making a perfect study subject for investigating the effects of environmental change on physical characteristics. Analysis of these measurements revealed that not only is the population of sheep putting on less body mass (an average decline of 5% over the past 24 years), but are also affected by a decrease in the length of their hind legs, suggesting that the Soay population really is declining in size, rather than a decline in body condition.

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Mean annual August weights of Soay sheep showing a pattern of decline across all age catagories

So what factors are driving this apparent phenotypic change over such short time scales? Apparently the answer isn’t evolution: selective pressures explained little of the observed pattern, instead environmental change (in this case the warming related to the North Atlantic oscillation index) is a more likely explanation:

In the past, Hirta’s sheep gorged on grass during their first summer, the team notes, piling on the weight in order to make it through the island’s typically harsh winters. But over the past quarter-century, Hirta has had unusually short and mild winters. As a result, Ozgul and colleagues propose, grass has become available for more months of the year, meaning the Soay sheep do not have to bulk up as much. In addition, Hirta’s harsh winters used to kill small ewes born to young mothers. But now these small ewes survive–and because of their low birth weight, they never get as big as normal sheep. That drives down the average size of the entire population, the team reports.  (Read More)